Notes-Seurat workflow


Seurat notes


1. NormalizaData
2. SCTransform
3. SelectIntegrationFeatures
4. FindIntegrationAnchors
5. IntegrateData
6. DefaultAssay (immune. combined) <- “integrated”
7. ScaleData
8. RunPCA
9. ElbowPlot
10. RunUMAP

  1. NormalizeData
  2. FindVariableFeatures
  3. SelectIntegrationFeatures
  4. ScaleData
  5. RunPCA
  6. ElbowPlot
  7. DefaultAssay (data. int) <- “integrated”
  8. ScaleData
  9. RunPCA
  10. RunUMAP
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